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Jesus Castagnetto 🇵🇪

@jmcastagnetto@mastodon.social
mastodon 4.8.0-nightly.2026-10-06
  • Open on mastodon.social

Also in BlueSky: https://bsky.app/profile/jmcastagnetto.bsky.social

Chemist (PhD, NYU '97), Bioinformatics mangler, Biomedical Informatics dabbler, Data artisan, R scribbler, Metalloprotein DB creator, former PHP/PEAR kludger.
#Rstats #OpenData #Science #BiomedicalInformatics #DataScience #DataVisualization #DataEngineering #PublicHealthInformatics #DataForGood
#dator

0 Followers
0 Following
38 Posts
Joined May 12, 2022
Personal Site:
https://castagnetto.site
Github:
https://github.com/jmcastagnetto
ORCID:
https://orcid.org/0000-0002-7188-1605
Other links:
https://linktr.ee/jmcastagnetto
Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

A good article on the #Claude #code #leak:

"The Snake That Ate Itself: What Claude Code’s Source Revealed About #AI #Engineering Culture"

'... The Uncomfortable Truth

The company that sells AI coding tools cannot build a quality product with its own AI coding tools...'

https://techtrenches.dev/p/the-snake-that-ate-itself-what-claude

techtrenches.dev
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

"Who will maintain the #web when PHP’s veterans retire?"

... A new Perforce report finds PHP's #developer base is aging out faster than it's being replenished — and #AI-generated code may be making the problem worse, not better ...

#PHP #OpenSource #JuniorDevs

https://thenewstack.io/php-web-skills-hiring-age/

Who will maintain the web when PHP's veterans retire?
The New Stack

Who will maintain the web when PHP's veterans retire?

A new Perforce report finds PHP's developer base is aging out faster than it's being replenished — and AI-generated code may be making the problem worse, not better.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 7mo ago

#TIL that, again, #Djikstra was a ahead of his time, saying that what we call #VibeCoding is flawed because a language is a less precise tool than a formal representation:

'On the foolishness of "natural language programming"' (late 1970s)
https://www.cs.utexas.edu/~EWD/transcriptions/EWD06xx/EWD667.html

#AI

cs.utexas.edu

E.W.Dijkstra Archive: On the foolishness of "natural language programming". (EWD 667)

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 7mo ago

From Scientific American: "AI was supposed to save coders time. It may be doing the opposite"
https://www.scientificamerican.com/article/why-developers-using-ai-are-working-longer-hours/

#VibeCoding #Code #Developers #AI

Why developers using AI are working longer hours
Scientific American

Why developers using AI are working longer hours

Studies find AI helps developers release more software—while logging longer hours and fixing problems after the code goes live

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 2mo ago
Replying to
And #Nature had a piece on this same topic yesterday: "International PhD students to face strict limits on time in the #us#science #universityhttps://www.nature.com/articles/d41586-026-02280-3 So sad, I cannot in good conscience recommend students to consider a PhD in USA under these circumstances.
International PhD students to face strict limits on time in the US
nature.com

International PhD students to face strict limits on time in the US

Trump administration takes action to address ‘forever students’.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago
Replying to
@jonthegeek@fosstodon.org @Mehrad@fosstodon.org I'd seen this type of representation before. There is an #Rstats package that does that type of #dataviz: https://github.com/uRosConf/voronoiTreemap
GitHub

GitHub - uRosConf/voronoiTreemap: R package for voronoi treemaps with added interactivity by shiny

R package for voronoi treemaps with added interactivity by shiny - uRosConf/voronoiTreemap

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

#TIL about an #RStats package made by a cool group from Univesity of #Chile to deal with #ICD10 and #ICD11 in #PublicHealth and #HealthInteroperability work:

https://github.com/RodoTasso/ciecl

#Health #DataScience

GitHub

GitHub - ropensci/ciecl: Clasificación Internacional de Enfermedades CIE-10/11 para Chile - SQL optimizado + fuzzy search (+ comorbilidades Charlson/Elixhauser)

Clasificación Internacional de Enfermedades CIE-10/11 para Chile - SQL optimizado + fuzzy search (+ comorbilidades Charlson/Elixhauser) - ropensci/ciecl

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

A good article from #Nature: "How to design effective scientific figures"
https://www.nature.com/articles/s41562-026-02466-9

#Science #Dataviz

How to design effective scientific figures - Nature Human Behaviour
Nature

How to design effective scientific figures - Nature Human Behaviour

Scientific figures strongly influence how research findings are interpreted, yet guidance on figure design has largely focused on technical aspects of visualization. In this ‘How to’ Comment, I outline a practical strategy for creating figures that communicate clearly across audiences and scientific contexts.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 4mo ago
Replying to
@sean@mastodon.me.uk Yep, I guess PHP has always been pragmatic. Used it back in the late '90s all through the '00s, for putting a web "face" to my bioinformatics research, and it was easy for a scientist like me to pick it up. Even got to co-author one of the first books on the language :-)
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

From The Register:
"#NHS staff resist using #Palantir #software"

'...Staff reportedly cite #ethics concerns, #privacy worries, and doubt the platform adds much..
'

#Surveillance #SurveillanceCapitalism

https://www.theregister.com/2026/04/03/nhs_staff_against_palantir/?td=keepreading

theregister.com

Are we human?

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From #SMBC:

https://www.smbc-comics.com/comic/meaning-7

Hover text: "The worst part is the robot makes him use reddit 7 hours a day, because that's what past employees were doing in its training data."

#Humor #DarkHumor #AI

Saturday Morning Breakfast Cereal - Meaning
smbc-comics.com

Saturday Morning Breakfast Cereal - Meaning

Saturday Morning Breakfast Cereal - Meaning

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago
Replying to
@BRicker @emjonaitis I have had good experience dealing with datasets in the hundreds of millions, using duckdb as the local database. Also, judicious use of parquet partitions might help.
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago
Replying to
@hrbrmstr@mastodon.social An announcement that sounds a tad presidential for some weird reason 🤣
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From The Register: "Brit #mathematician lets #AI #agent loose with credit card – cue password #leaks, CAPTCHA #chaos and more"

https://www.theregister.com/software/2026/05/05/british-mathematician-hands-openclaw-agent-a-credit-card/5228654

theregister.com

Are we human?

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From #Futurism: "The Horrible #Economics of #AI Are Starting to Come Crashing Down"

#AIBubble

https://futurism.com/artificial-intelligence/economics-ai-tokens-crashing-down

The Horrible Economics of AI Are Starting to Come Crashing Down
Futurism

The Horrible Economics of AI Are Starting to Come Crashing Down

As costs continue to ramp up, the AI industry's enterprise customers could soon be left holding the bag due to higher prices.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

The evaluation of #Anthropic #Mythos by #AISI #UK, does not seem to demonstrate the super-cracking ability mentioned elsewhere. It is noted its specific ability to chain attacks.

https://www.aisi.gov.uk/blog/our-evaluation-of-claude-mythos-previews-cyber-capabilities

See also: https://arstechnica.com/ai/2026/04/uk-govs-mythos-ai-tests-help-separate-cybersecurity-threat-from-hype/

#AI #Security

AI Security Institute

Our evaluation of Claude Mythos Preview’s cyber capabilities | AISI Work

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago
Replying to
@hrbrmstr Nice to have the drops back. Also, congrats for the new job!
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

#TIL about this good #IBM video explaining clearly and didactically what #AI technical debt means, its causes and impact:

https://youtu.be/DgXV8QSlI4U?si=siQ0OY8kzpyNVSbX

#FOMO #TechnicalDebt #VibeCoding

What is AI Technical Debt? Key Risks for Machine Learning Projects

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 9mo ago

"Defunding #fungi: #US’s living library of ‘vital ecosystem engineers’ is in danger of closing"

#Science #crisis #USA #Biology

https://www.theguardian.com/environment/2025/dec/26/arbuscular-mycorrhizal-fungi-living-library-vital-ecosystem-engineers

theguardian.com
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

A very interesting paper from #Nature that discusses current trends and gives an outlook of future developments:

"Tracing the rise of #biomedical foundation #models"

https://www.nature.com/articles/s41587-026-03135-y

#AI

Tracing the rise of biomedical foundation models - Nature Biotechnology
Nature

Tracing the rise of biomedical foundation models - Nature Biotechnology

A survey of biological foundation models reveals current trends and provides an outlook for future developments in this rapidly evolving field

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From #OWID: "What is the most #unequal country in South America? It depends on what metric you look at"

https://ourworldindata.org/data-insights/what-is-the-most-unequal-country-in-south-america-it-depends-on-what-metric-you-look-at

In my country, #Peru, 0.1% gets 22% of the income. Extremely unequal.

#SouthAmerica #Economics #Disparity

Our World in Data

What is the most unequal country in South America? It depends on what metric you look at

One way to measure income inequality is to look at the share of all income that goes to the top income earners. The chart plots this for all seven South American countries with comparable 2022 pre-tax income estimates in the World Inequality Database.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago
Replying to
@jonthegeek@fosstodon.org @Mehrad@fosstodon.org BTW, for some reason when trying to connect to data.one.org from #Peru, I get blocked with a 403. Had to use a VPN connected to USA to be able to reach that site.
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago
Replying to
@hrbrmstr This bit is very direct, hopefully we all survive and learn from 'the reckoning': ¨... The reckoning will not be subtle. The firms still doing the work properly will be in a position to charge for it. The firms that have hollowed themselves out will discover that what they hollowed out was the thing the client was paying for. ..."
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

#RedClara y #CUDI están convocando a un "#Programa Piloto #LMM #Federado"

https://cudi.edu.mx/noticias/lmm-federado

#LLM #AI #Model #LATAM

Sé pionero en la IA regional: Únete al Piloto LMM Federado CEDIA - RedCLARA | Cudi
cudi.edu.mx

Sé pionero en la IA regional: Únete al Piloto LMM Federado CEDIA - RedCLARA | Cudi

Convocatoria: Programa Piloto LMM Federado CEDIA - RedCLARA ConvocatoriaPrograma Piloto LMM Federado CEDIA - RedCLARA CUDI, en colaboración con RedCLARA, invita a la comunidad académica y de investigación a participar en el programa piloto del Modelo de Lenguaje de Gran Escala (LMM) Federado.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

Oncoming #Security #Webinar by #OAS (#OEA):

Take Control of Your #Digital Security: Introducing the Updated Gender-Responsive #Cybersecurity MOOC "Our Networks, Our Security"

https://oas-org.zoom.us/webinar/register/WN_9qZ5uBG6Qlm8GE00H76_ww#/registration

oas-org.zoom.us
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

#TIL about the #Cisco #OpenSource tool: "#Model #Provenance Kit" https://github.com/cisco-ai-defense/model-provenance-kit

Tries to give a hand with tracking provenance as well as comparing #AI models.

GitHub

GitHub - cisco-ai-defense/model-provenance-kit: Toolkit to assess and determine model provenance

Toolkit to assess and determine model provenance. Contribute to cisco-ai-defense/model-provenance-kit development by creating an account on GitHub.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

"Alibaba’s Tongyi Lab Releases #VimRAG: a Multimodal #RAG #Framework that Uses a Memory #Graph to Navigate Massive Visual Contexts"

#AI #MultimodalRAG

https://www.marktechpost.com/2026/04/10/alibabas-tongyi-lab-releases-vimrag-a-multimodal-rag-framework-that-uses-a-memory-graph-to-navigate-massive-visual-contexts/

marktechpost.com
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From #Berkeley: "How We Broke Top #AI #Agent #Benchmarks: And What Comes Next"

https://rdi.berkeley.edu/blog/trustworthy-benchmarks-cont/

rdi.berkeley.edu

Center for Responsible, Decentralized Intelligence at Berkeley

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago
Replying to
@knud Ideally, yes. But, for example, for us scientist in Peru, that is a very expensive proposition and one that is never covered by our universities. I am not sure about the situation for author of the paper I mentioned.
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

An interesting podcast from #StackOverflow on #digital #sovereignty and #sovereign #AI.

"No country left behind with sovereign AI" https://stackoverflow.blog/2026/04/17/no-country-left-behind-with-sovereign-ai/

#SovereignAI

No country left behind with sovereign AI - Stack Overflow
stackoverflow.blog

No country left behind with sovereign AI - Stack Overflow

Ryan welcomes Stephen Watt, distinguished engineer and VP of Red Hat’s Office of the CTO, to chat about digital sovereignty and sovereign AI.

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

From Venture Beat: "One command turns any open-source repo into an #AI #agent #backdoor. #OpenClaw proved no supply-chain scanner has a detection category for it"

#Security #OpenSource

https://venturebeat.com/security/one-command-open-source-repo-ai-agent-backdoor-openclaw-supply-chain-scanner

venturebeat.com
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago
Replying to
@peribotsarah The article's point is not that is a startup, but that the code written by their own code AI model is not good at all. Not sure if I will *still* consider Anthropic a startup at this point.
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

A good take on #Dawkins suffering from #AIPsychosis thinking that #Claude is sentient:

"Richard Dawkins and The Claude Delusion"

https://garymarcus.substack.com/p/richard-dawkins-and-the-claude-delusion

#AI

Richard Dawkins and The Claude Delusion
garymarcus.substack.com

Richard Dawkins and The Claude Delusion

The great skeptic gets taken in

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 4mo ago
Replying to
@davidgerard@circumstances.run Well, it will not be worse than the quality of the JS, Python, Java, C, C++ code out there. That is more a problem on how the AI models are trained, w/o a simple quality control to guide the selection. Same can be said for the text, images, etc. the companies feed the models.
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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 5mo ago

#TIL about the new book by the #Internet #Archive: "Vanishing #Culture: A Report on Our Fragile Cultural Record (2026)"

#InternetArchive #ebook #OpenAccess

https://archive.org/details/vanishing-culture-2026

Internet Archive

Vanishing Culture: A Report on Our Fragile Cultural Record (2026) : Luca Messarra : Free Download, Borrow, and Streaming : Internet Archive

DOWNLOAD THE FREE EBOOK:PDFEPUBPURCHASE A PRINT COPY:Buy the book from Better World Books or any online bookstore.Order a copy through your local...

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 6mo ago

I have an unfounded theory that in #Peru we are low key training people to do complex estimations and take multidimensional decision, otherwise why have 35 different parties, and have to cast 5 distinct votes in today's #election: president, national senate, regional senate, deputies (congress representative for the #USA folks), and Andean Parliament. And then we got preferential votes.

The voting ballot was huge (see the models here https://eg2026.onpe.gob.pe/cedula/descarga-tu-cedula/ with made up parties).

#vote2026

eg2026.onpe.gob.pe

Elecciones Generales 2026

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Open post
Jesus Castagnetto 🇵🇪 @jmcastagnetto@mastodon.social
· 2mo ago
"#Global #childhood #immunization coverage inches forward despite conflict and hesitancy – #UNICEF, #WHO" https://www.who.int/news/item/15-07-2026-global-childhood-immunization-coverage-inches-forward-despite-conflict-and-hesitancy---unicef--who #vaccination #health #GlobalHealth
Global childhood immunization coverage inches forward despite conflict and hesitancy – UNICEF, WHO
who.int

Global childhood immunization coverage inches forward despite conflict and hesitancy – UNICEF, WHO

In 2025, 90% of infants globally – or nearly 116 million – received at least one dose of a diphtheria, tetanus and pertussis (DTP) vaccine, and 85% – or 110 million – completed the full three-dose series, according to the annual WHO-UNICEF Estimates of National Immunization Coverage (WUENIC) released today.  

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